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  • Genome Analysis Tool Kit
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Genome Analysis Tool Kit (GATK) is installed on fourierseq at /opt/GenomeAnalysisTK-1.4-11-g845c0b1/ and the jar files (AnalyzeCovariates.jar and GenomeAnalysisTK.jar) are in fourierseq users' paths.

More documentation about using GATK can be found here

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