SSH into stampede2 and copy files needed for today's exercises.
Get set up for the exercises
ssh <username>@stampede2.tacc.utexas.edu cds cd my_rnaseq_course cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partA . cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_3_partB .
If you've already copied data over, check that the data files required are there.
Get set up for the exercises
ssh <username>@stampede2.tacc.utexas.edu cds cd my_rnaseq_course ls day_3_partA/gene_counting_exercise/ ls day_3_partA/gene_expression_exercise/
Open another SSH session and request a idev session
set up idev session in another tab
ssh <username>@stampede2.tacc.utexas.edu idev -m 120 -q normal -A UT-2015-05-18 -r RNASeq-Wed #Leave out -r RNASeq-Wed if your TACC id is not part of the reservation
Go back to Course Outline
