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Protein Identification and Validation

       Identify peptides/proteins given raw mass-spec data, 6 hour minimum ($282 internal, $360 external) per project.

1. Protein identification using Trans-Proteome Pipeline

Identify list of proteins in the sample using multiple search algorithms in Trans-Proteome Pipeline (TPP)

 

2. Peptide hits validation

Validate the peptide hits returned by the mass-spectrometry peptide identification algorithms

  • Deliverables:
    • reports generated by peptideProphet

3. Protein hits validation

Validate the protein hits using the pepXML peptideProphet output

  • Deliverables:
    • reports generated by proteinProphet
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