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  • Running ABI small-rna pipeline on TACC
    • About the pipeline- how it works, advantages and disadvantages.
    • Issues faced - restrictions on data, setting up configuration files, things we tried.
    • Parallelizing the pipeline (way around interactive processes)
    • Results
  • Quantifying mature miRNAs from small-rna pipeline results
    • Our scripts and what they do Normalization ??* Conversion of pipeline output to SAM format ( viewing the reads in base space)
  • Looking for novel miRNA, siRNA, moRNA
    • Generating coverage graphs around each miRNA
    • Could we get Rodney to talk about how they identified that antisense miRNA?
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