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Day 2: NGS workflow overview and raw sequence pre-processing

Overview NGS data

processing

PDF

name

NGSinfro

processing, part 1 (NGSintro.pdf)
Pre-processing raw sequences
Overview NGS data processing processing, part 2 (NGSintro.pdf)

Day 3: Alignment and BAM file manipulation

Alignment

Day 4: Post-Alignment AnalysisAnalys
is

Samtools - viewing, counting and sorting your alignment data
BedTools - analyzing your aligned data

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