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cd $SCRATCH/byteclub/multiqc/01_fastq multiqc . |
When this completes you'll see a new file and directory:
- multiqc_report.html – the MultiQC HTML report with its default name
- multiqc_data – directory with text files containing MultiQC data used in the report as well as a log file
Here's what this basic FastQC report looks like: http://web.corral.tacc.utexas.edu/iyer/byteclub/multiqc/01_basic.multiqc_report.html
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To view the file you created in a web browser, it must be copied somwhere where a browser can open it. An easy way to do this is to copy it to your laptop like this, for example, changing the user name from abattenh:
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