This is the home of the Core NGS Tools course, May 20172018, at https://wikis.utexas.edu/display/CoreNGSTools
This workshop provides an introduction to common analysis tools and file formats currently used in NGS, with emphasis on quality assessment and manipulation of raw NGS sequences (FastQC, cutadapt), read mapping (bwa, bowtie2), the Sequence Alignment Map (SAM) format, and tools for manipulating BAM files (samtools, bedtools). Participants will gain hands-on experience using these and other NGS tools in the Linux command line environment at TACC, as well as exposure to the many bioinformatics resources TACC makes available.
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We will meet in Room 4.144 of Mezes Hall. We encourage you to use the computers provided in the classroom, but you may also use your personal laptops206 of Parlin hall (PAR). As there are no workstations available in this room, you will need to bring your personal laptop or work closely with someone who has one. |
Day 1: Intro to NGS, Linux and TACC
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