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Day 2: Working with raw sequences
- TACC overview
- lecture: the FASTQ format ( 2017_05-NGSintro.pdf
- , part 2)
- Working with FASTQ files
- lecture: Sequence QC & preparation ( 2017_05-NGSintro.pdf , part 3)
- Sequence quality control with FastQC
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- TACC batch jobs
- Trimming sequences
- lecture: Alignment to a reference ( 2017_05-NGSintro.pdf
- , part 4)
- Alignment
Day 4: Post-Alignment Analysis
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