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- Introduction
- Getting started at TACC – logging in
- lecture: NGS overview & technology (2020_06-NGSintro.pdf, part 1)
- Setting up your TACC environment
Day 2: Working with raw sequences
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- lecture: NGS Terminology (2020_06-NGSintro.pdf, part 3)
- TACC batch jobs
- lecture: the FASTQ format (2020_06-NGSintro.pdf, part 23)
- Working with FASTQ files
- lecture: Sequence QC & preparation (2020_06-NGSintro.pdf, part 3)
- Sequence quality control
- Trimming
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