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- Introduction
- Getting started at TACC – logging in
- lecture: NGS overview & technology (2020_06-NGSintro.pdf, part 1)
- Setting up your TACC environment
Recording of Day 1:
Day 2:
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Transferring files and TACC
- File systems and transferring files
- lecture: NGS Terminology (2020_06-NGSintro.pdf, part 2)
- TACC batch jobs
- Recording of Day 2:
Day 3: More on FASTQ
- lecture: the FASTQ format (2020_06-NGSintro.pdf, part 3)
- Working with FASTQ files
- lecture: Sequence QC & preparation (2020_06-NGSintro.pdf, part 3)
- Sequence quality control
- Trimming
Day
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4: Alignment and BAM file manipulation
- lecture: Alignment to a reference (2020_06-NGSintro.pdf, part 4)
- The Alignment workflow
Day
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5: Post-Alignment Analysis
Day 5: Miscellaneous
- Catch up from previous days
Resources
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