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Use our summer school reservation (CoreNGSday4) when submitting batch jobs to get higher priority on the ls6 normal queue today: sbatch --reservation=CoreNGSday4 <batch_file>.slurm
idev -m 180 -N 1 -A OTH21164 -r CoreNGSday4
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Overview
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| language | bash |
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| title | Start an idev session |
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idev -pm normal180 -mN 1801 -A OTH21164 -Nr 1 CoreNGSday4 |
Then stage the sample datasets and references we will use.
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| title | Make sure you're in a idev session |
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| Code Block |
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| language | bash |
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| title | Start an idev session |
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| idev -m 120 -AN OTH211641 -NA 1OTH21164 -r CoreNGSday4 |
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module load biocontainers # takes a while
module load bwa
bwa |
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| Expand |
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| title | Make sure you're in a idev session |
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| Code Block |
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| language | bash |
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| title | Start an idev session |
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| idev -m 120 -A OTH21164 -N 1 -pA normalOTH21164 -r CoreNGSday4 |
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# If not already loaded
module load biocontainers # takes a while
module load samtools
samtools |
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