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Part 1: Linux/TACC Introduction

• Overview of NGS data analysis
• Linux Fundamentals
  • Linux startGetting started
  • Editing Filesfiles
  • Stampede profile
  • Piping and redirection
• Overview of the TACC Stampede cluster
• Transferring files to/from TACC

Part 2: Sequencing formats

• Overview of NGS data analysis
• The FASTA sequencing data format
• The FASTQ sequencing data format, with Illumina/GSAF-specific details
• Compression, Linux manipulation of fastq files

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