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- Follow the steps listed above on this web page under the expanding section "This is your homework due 11/25..." to log into appsoma and setup access to the data you will need from here on.
- Move into the "rawdata" directory, find the first four lines of the read 1 sequence file for the MURI 102 sample from lane 6 of sequencing run SA14008 - put them into a new file in that directory called "s1.fq" and copy it into an email.
- Move into the "finaldata" directory and make sure you can see the gene expression data file "all3x3.counts"
- Using the linux "sort" command, sort all3x3.counts 6 times, sorting on the expression values of each of the 6 samples separately from lowest to highest, redirecting the output of each sort into a separate file.
- Using the linux command "tail -1" on each of these 6 files, copy the name of the most abundant gene from each sample into the same email.
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