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Molecular Biology concepts

StStructures and motifs

Programming concepts

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  1. Scan the  genome upstream of the sequence looking for sequences that match criteria for regulatory sequence.

  2. Find motifs in our sequence and compare them to motif databases.

Files required:

OPN1LW_nuclsequenceupstream20000.hg19.fastaOPN1LW_annotation.hg19.gtf

Additional Resources