Versions Compared

Old Version 109

changes.mady.by.user Amelia W Hall

Saved on

compared with

New Version 110

changes.mady.by.user Amelia W Hall

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

We can do this filtering on the hg19_rnaseq_mirnaseq_intersect.bed file we just created using bedtools intersect.

Code Block
languagebash
cd $SCRATCH/core_ngs/intersect/
cat hg19_rnaseq_mirnaseq_intersect.bed | awk 'BEGIN{FS="\t";OFS="\t";}{if ($6 == "+"){print}}' | more

You could also insist on columns 6 and 12 both being the plus strand as such:

Code Block
languagebash
cd $SCRATCH/core_ngs/intersect/
cat hg19_rnaseq_mirnaseq_intersect.bed | awk 'BEGIN{FS="\t";OFS="\t";}{if ($6 == "+" && $12 == "+"){print}}' | more