...
| Code Block |
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cd
ln -s -f $SCRATCH scratch
ln -s -f $WORK work$WORK2 work2
ln -s -f /work2/projects/BioITeam
ln -s -f /workwork2/projects/BioITeam/projects/courses/Core_NGS_Tools CoreNGS
mkdir -p ~/local/bin
cd ~/local/bin
ln -s -f /workwork2/projects/BioITeam/common/bin/launcher_makercreator.py
ln -s -f /workwork2/projects/BioITeam/ls5/opt/cutadapt-1.10/bin/cutadapt
ln -s -f /work/projects/BioITeam/ls5/opt/multiqc-1.0/multiqc
ln -s -f /work/projects/BioITeam/ls5/opt/samstat-1.09/samstatcommon/bin/launcher_maker.py
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| Anchor |
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| Catchup_bashrc |
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| Catchup_bashrc |
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.bashrc setup
...
| Code Block |
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cd
cp .bashrc .bashrc.beforeNGSbeforeNGSTools |
Copy and configure the login profile for this class
| Code Block |
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cd
cp /workwork2/projects/BioITeam/projects/courses/Core_NGS_Tools/tacc/bashrc.corengs.ls5stampede2 .bashrc
chmod 600 .bashrc |
...