A healthy taste of resources available, specifically for this course - not a comprehensive catalog.
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Terminal
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programs
- Macs and Linux have Terminal programs built-in – find it now on your computer
- Windows optons:Windows needs help
- Windows 10
- Command shell has ssh and scp (may require latest Windows updates)
- Start menu → Search for Command
- Windows Subsystem for Linux – Windows 10 Professional includes a Ubuntu-like bash shells
- See https://docs.microsoft.com/en-us/windows/wsl/install-win10
- We recommend the Ubuntu Linux distribution, but any Linux distribution will have an SSH client
- Command shell has ssh and scp (may require latest Windows updates)
- or
- Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
- See https://docs.microsoft.com/en-us/windows/wsl/install-win10
- We recommend the Ubuntu Linux distribution, but any Linux distribution will have an SSH client
- simple Terminal and file copy programs
- download either the Putty installer (https://the.earth.li/~sgtatham/putty/latest/w64/putty-64bit-0.70-installer.msi)
- or just putty.exe (terminal) and pscp.exe (secure copy client)
- Cygwin – http://www.cygwin.com/
- A full Linux environment, including X-windows for running GUI programs remotely
- Complicated to install
- Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
- Windows 10
Linux/TACC
- Linux fundamentals on this wiki
- Cloud recording of CBRS's Intro to Unix short course, taught by Benni Goetz:
- Cloud recording of CBRS's Intro to TACC short course, taught by Benni Goetz:
Online tutorials:
- Ryan's Linux Tutorial: http://ryanstutorials.net/linuxtutorial/
- Unix bootcamp for biologists: http://korflab.ucdavis.edu/bootcamp.html
- Unix primer (longer version) for biologists:
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