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Bonus Tutorial: Evaluating raw sequencing data
Presentation:
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Single-nucleotide variant (SNV) calling
Presentation: Structural variant (SV) calling
Tutorial: Bacterial genome variants the easy way – breseq
Tutorial: Mapping with bowtie2
Tutorial: Integrative Genome Viewer (IGV)
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Wednesday May 27th. Day 2 – "The Principles of Variant Calling"
Presentation
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Presentation: Structural variant (SV) calling
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: Read Mapping
Tutorial: Mapping with bowtie2
Tutorial: Integrative Genome Viewer (IGV)
Bonus Tutorial: Evaluating mapped read data
Tutorial: SNV calling with SAMtools
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