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Usage: bwa index [-a bwtsw|is] [-c] <in.fasta>
Options: -a STR BWT construction algorithm: bwtsw or is [auto]
-p STR prefix of the index [same as fasta name]
-b INT block size for the bwtsw algorithm (effective with -a bwtsw) [10000000]
-6 index files named as <in.fasta>.64.* instead of <in.fasta>.*
Warning: `-a bwtsw' does not work for short genomes, while `-a is' and
`-a div' do not work not for long genomes. Please choose `-a'
according to the length of the genome. |
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