SSH into lonestar5 and copy files needed for today's exercises.
| Code Block |
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| title | Get set up for the exercises |
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ssh <username>@ls5.tacc.utexas.edu
cds
cd my_rnaseq_course
nohup cp -r /work/01184/daras/rnaseq_course_2016/day_3_partA . &
nohup cp -r /corral-repl/utexas/BioITeam/rnaseq_course_2016/day_3_partB . &
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If you've already copied data over, check that the data files required are there.
| Code Block |
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| title | Get set up for the exercises |
|---|
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ssh <username>@ls5.tacc.utexas.edu
cds
cd my_rnaseq_course
ls day_3_partA/gene_counting_exercise/
ls day_3_partA/gene_counting_exercise/hisat_results/
ls day_3_partA/gene_expression_exercise/
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Open another SSH session and request a idev session
| Code Block |
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| title | set up idev session in another tab |
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ssh <username>@ls5.tacc.utexas.edu
idev -m 120 -q development -A UT-2015-05-18 -r CCBB_Day_3
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Go back to Course Outline