...
Now change into the directory and call the script with no arguments to see usage
| Code Block | ||
|---|---|---|
| ||
cd $SCRATCH/core_ngs/align2 /work/01063/abattenh/seq/code/script/align/align_bwa_illumina.sh |
Run the pipeline
| Code Block | ||
|---|---|---|
| ||
/work/01063/abattenh/seq/code/script/align/align_bwa_illumina.sh ./fastq/Sample_Yeast_L005_R1.cat.fastq.gz yeast_chip sacCer3 1 50 |