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- Introduction
- Getting started at TACC – logging in
- Overview NGS data processing, part 1 NGS overview & technology (2017_05-NGSintro.pdf, part 1)
- Setting up your TACC environment
- File systems and transferring files
Day 2: NGS workflow overview and raw sequence pre-processing
- FASTQ format (2017_05-NGSintro.pdf, part 2)
- Working with FASTQ files
- Sequence QC & preparation Overview NGS data processing, parts 2 & 3 (2017_05-NGSintro.pdf, part 3)
- Pre-processing raw sequences
- Running batch jobs at TACC (time permitting)
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