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An MS student taking the thesis option would register for the two-course sequence, starting with CE 698A the first semester of research, and subsequently CE 698B.  CE 698B is required in the semester of graduation.  CE 698B may be repeated until the thesis is complete. 

Students in the MastersMaster's Departmental Report option generally register for
CE 398D DEPARTMENTAL REPORT in their final semester. 

PhD students will register for 397D (or 697D) Dissertation Research until they are officially admitted to candidacy.  Once admitted to candidacy they are required to be registered in CE 399W DISSERTATION (or 699W, or 999W) in the Fall and Spring semesters until graduation. CE X99W Dissertation is required registration in the final semester.