Hmmer
Version 3.0 is installed on Fourierseq as of 6/14/11 by SPHS.
Documentation:
See man pages for each command, or visit the hmmer web site
Commands:
hmmalign
hmmbuild
hmmconvert
hmmemit
hmmer
hmmfetch
hmmpress
hmmscan
hmmsearch
hmmsim
hmmstat
jackhmmer
phmmer