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Tip |
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We meet in Room 206 of Parlin hall (PAR). As there are no workstations available in this room, you will need to bring your personal laptop or work closely with someone who has one. You will also need a UT EID to access the UT wireless network. There will be a ~15 minute break each day around 10:30am with refreshments available in PAR 303. |
Day 1: Intro to NGS, Linux and TACC
- Introduction
- Getting started at TACC – logging in
- lecture: NGS overview & technology (2017_2018-05-NGSintro.pdf, part 1)
- Setting up your TACC environment
- File systems and transferring files
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- TACC batch jobs
- lecture: the FASTQ format (2017_2018-05-NGSintro.pdf, part 2)
- Working with FASTQ files
- lecture: Sequence QC & preparation (2017_2018-05-NGSintro.pdf, part 3)
- Sequence quality control
- Trimming
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- lecture: Alignment to a reference (2017_2018-05-NGSintro.pdf, part 4)
- The Alignment workflow
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