...
- install QIIme2
Installation
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#miniconda install
mkdir -p $WORK/src/miniconda
cd $WORK/src/miniconda
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
# hold enter to scroll through user agreement
# enter yes to agree to user agreement
# press enter to agree to installation location $HOME/miniconda3
# press enter to not change your pythonpath variable
logout
ssh back into tacc
cd $WORK/src
wget https://data.qiime2.org/distro/core/qiime2-2020.2-py36-linux-conda.yml
$HOME/miniconda3/bin/conda env create -n qiime2-2020.2 --file qiime2-2020.2-py36-linux-conda.yml
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Tutorial:
https://github.com/LangilleLab/microbiome_helper/wiki/Amplicon-SOP-v2-(qiime2-2020.2)