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- Introduction
- Getting started at TACC – logging in
- lecture: NGS overview & technology (20202021_06-NGSintro.pdf, part 1)
- Setting up your TACC environment
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- File systems and transferring files
- lecture: NGS Terminology (20202021_06-NGSintro.pdf, part 2)
- TACC batch jobs
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- lecture: the FASTQ format (20202021_06-NGSintro.pdf, part 3)
- Working with FASTQ files
- lecture: Sequence QC & preparation (20202021_06-NGSintro.pdf, part 3)
- Sequence quality control
- Trimming
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- lecture: Alignment to a reference (20202021_06-NGSintro.pdf, part 4)
- The Alignment workflow – references
- lecture: Alignment to a reference (20202021_06-NGSintro.pdf, part 4)
- The Alignment workflow – performing an alignment
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