Page History

...

Cuffdiff identifies differentially expressed transcripts.

Wiki Markupcuffdiff <transcripts.combined.gtf> <sample1_replicate1.sam\[GSAF:,...,sample1_replicateM\]> <sample2_replicate1.sam\[GSAF:,...,sample2_replicateM.sam\]>... \ [sampleN.sam_replicate1.sam\[GSAF:,...,sample2_replicateM.sam\]\] &nbsp;&>cuffdiff.log &

Example: cuffdiff transcripts.combined.gtf geneexp1_1.sam,geneexp1_2.sam geneexp2_1.sam,geneexp2_2.sam &>cuffdiff.log &

...