Versions Compared

Old Version 16

changes.mady.by.user Geoffrey R Colburn

Saved on

compared with

New Version 17

changes.mady.by.user Geoffrey R Colburn

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

Samtools

Setup output directory.

solid
Code Block
title

mkdir samtools
borderStyle

If you do not have an alignment file in the SAM format you may want to start with Introduction to mapping.

cp solid
Code Block
title

cp bowtie/REL606.5.sam samtools/
borderStylesolid
Code Block
title
 
cp bowtie/REL606.5.fasta samtools/
borderStyle

Prepare reference file.

Code Block
titlesamtools faidx samtools/REL606.5.fasta
borderStylesolid
...