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- Which mapper finds more variants?
- Can you figure out how to filter the VCF files on various criteria, like coverage, quality, ... ?
- How many high quality mutations are there in these E. coli samples relative to the reference genome?
Next up
We will get a chance to look Look at how the reads supporting these variants were aligned to the reference genome by Using continuing the Integrative Genomics Viewer (IGV) tutorial.
Old stuff
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