...
alignment type | aligner options | pro's | con's |
---|---|---|---|
global with bwa | single end reads:
paired end reads:
|
|
|
global with bowtie2bowtie2 --global | bowtie2 |
|
|
local with bwa | bwa mem |
|
|
local with bowtie2 | bowtie2 --local |
|
|
...
...
alignment type | aligner options | pro's | con's |
---|---|---|---|
global with bwa | single end reads:
paired end reads:
|
|
|
global with bowtie2bowtie2 --global | bowtie2 |
|
|
local with bwa | bwa mem |
|
|
local with bowtie2 | bowtie2 --local |
|
|
...