Overview

The fastQC tool was presented in the second tutorial on the first day of the class as the go to tool for quality control analysis of fastq files, but there is an underlying issue that checking each fastq file is quite daunting and evaluating each file individually can introduce its own set of artifacts or biases. The MultiQC tool represents a tool which works directly on fastQC reports to quickly generate summary reports to both identify samples that are different among a group and to make global decisions about how to treat a set of files.toc

Learning Objectives

In this tutorial, we will:

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