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# Load the main BioContainers module if you have not already
module load biocontainers # may take a while
# Load the multiqc module and ask for its usage information
module load multiqc
multiqc --help |
Even though multiqc has many options, it is quite easy to create a basic report by just pointing it to the directory where individual reports are located:
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| mkdir -p $SCRATCH/core_ngs/multiqc/fqc.atacseq
cd $SCRATCH/core_ngs/multiqc/fqc.atacseq
cp $CORENGS/multiqc/fqc.atacseq/*.zip . |
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Even though multiqc has many options, it is quite easy to create a basic report by just pointing it to the directory where individual reports are located:
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cd $SCRATCH/core_ngs/multiqc
multiqc fqc.atacseq |
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