Expand | ||||
---|---|---|---|---|
| ||||
meet 8 am Monday – students will start ariving ~8:30. room key – should be automatically opened at 7:30 am name tags – Rayna will provide; pick up from her Friday at Big Data sign in sheet & sign to room – Amelia visit room to check out video hookups, lab computers – Friday 12:45 - 1pm
print cheat sheets – Amelia obtain stampede allocation info from Hans – Anna add attendees credentials to stampede login8 – Anna course artifacts – /corral-repl/utexas/BioITeam/core_ngs_tools – make subdirctories & chmod 777 everything web URL: http://web.corral.tacc.utexas.edu/BioITeam, corresponds to /corral-repl/utexas/BioITeam/web |
Misc Day 1: Linux/TACC Introduction
- Linux fundamentals (needs update)
- Getting started at TACC
- Editing files (old) Piping and redirection (old)
Misc Day 2: Raw Sequencing data manipulation
...
- Example of NGS analyses
- The FASTA sequencing data format
- Batch manipulation of FASTQ files
Misc Day 4: Odds & Ends
- Obtaining public datasets from NCBI (needs update)
- Visualize mapped data at UCSC genome browser (needs update)
- Shell scripting (needs update)
...