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We will meet in Room 101B of the Flawn Academic Center (FAC) building. We STRONGLY encourage you to use the computers provided in the classroom, but you may also bring your personal laptops. |
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Day 1: Linux
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TACC
- Introduction's Stampede clusterStampede file systems
Day 2: Raw Sequencing data manipulation
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Day 3: Alignment and BAM file manipulation
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Part
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2: Odds and ends
- UCSC Genome Browser
- Obtaining public datasets from NCBI
- Shell scripting
Enrichment modules
Core NGS Tools -- Resources
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Link to Etherpad: https://etherpad.mozilla.org/g2NxIEAFWL
Use this to post any questions you have about the lessons and tutorials.
Your Instructors
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room key – should be automatically opened at 7:30 am name tags – Rayna will provide sign in sheet & sign to room – Amelia visit room to check out video hookups, lab computers – Rayna will give us time print cheat sheets – Amelia obtain allocation info from Hans – Anna ask Scott to add attendees credentials to login8 – Anna course artifacts – /corral-repl/utexas/BioITeam/core_ngs_tools – make subdirctories & chmod 777 everything meet 8am Monday
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