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  • Overview of NGS data processing
  • Pre-processing FASTQ sequences

Day 3: Alignment and BAM file manipulation

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Core NGS Tools -- Resources

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Info for the instructors
Info for the instructors

meet 7:45 am Monday – students will start ariving ~8:30.

room key – should be automatically opened at 7:30 am

name tags – Rayna will provide; pick up from her Friday at Big Data

sign in sheet & sign to room – Amelia

visit room to check out video hookups, lab computers – Rayna will give us timeFriday 12:45 - 1pm

  • last year all the classroom computers used credentials userid: student password: hookem
  • check whether this is still true or if UT EIDs are required

print cheat sheets – Amelia

obtain stampede allocation info from Hans – Anna

add attendees credentials to stampede login8 – Anna

course artifacts – /corral-repl/utexas/BioITeam/core_ngs_tools – make subdirctories & chmod 777 everything

meet 8am Monday

web URL: http://web.corral.tacc.utexas.edu/BioITeam, corresponds to /corral-repl/utexas/BioITeam/web

 

 

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