Title: Introduction to RNA Seq Course  
Author: Dhivya Arasappan May 20, 2015
Last Changed by: Dhivya Arasappan Jun 27, 2023
Tiny Link: (useful for email) https://wikis.utexas.edu/x/0QAuBg
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Incoming Links
Bioinformatics Team (BioITeam) at the University of Texas (27)
    Page: Logistics- Day 4
    Page: Using the Lonestar5 Cluster
    Page: Assessing Mapping Results I
    Page: Plotting DESEQ2 Results
    Page: Running the new tuxedo suite
    Page: Stampede2 TACC/Unix Exercise
    Page: Mapping with STAR
    Page: Day 2 Take Away Points
    Page: Visualization using Integrated Genome Viewer (IGV)
    Page: Day 1 Take Away Points
    Page: RNA-Seq Approaches
    Page: Lonestar5 TACC/Unix Exercise
    Page: Assessing Mappings Results II
    Page: Day 3 Take Away Points
    Page: Logistics-Day 1
    Page: The Quickest Unix Refresher ever
    Page: Pseudomapping with Kallisto
    Page: GO Enrichment
    Page: Logistics - Day 2
    Page: Mapping with Tophat Exercises
    Page: Clustering using WGCNA
    Page: MultiQC
    Page: Logistics
    Page: Testing for Differential Expression
    Page: Day 3 take aways
    Page: Mapping with HISAT2
    Page: FASTQ Manipulation Tools
Core NGS Tools (4)
    Page: 2021 Core NGS Resources
    Page: Core NGS Resources
    Page: 2022 Core NGS Resources
    Page: 2020 Core NGS Resources
Hierarchy
Parent Page
    Page: Bioinformatics Courses and Content
Children (44)
    Page: Alternative Applications of RNA-seq
    Page: Assessing Mapping Results I
    Page: Assessing Mappings Results II
    Page: Clustering using WGCNA
    Page: Day 1 Take Away Points
    Page: Day 3 Take Away Points
    Page: Day 3 take aways
    Page: Day 3 take aways 2015
    Page: Day 4 Take Away Points
    Page: DESEQ2 GRAPHS
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Recent Changes
Time Editor  
Jun 27, 2023 13:20 Dhivya Arasappan View Changes
Jun 22, 2023 13:26 Dhivya Arasappan View Changes
Jun 19, 2023 13:18 Dhivya Arasappan View Changes
Jun 16, 2023 12:21 Dhivya Arasappan View Changes
Jun 15, 2023 11:18 Dhivya Arasappan  
Outgoing Links
External Links (7)
    https://zoom.its.utexas.edu/home
    https://wikis.utexas.edu/display/RCTFusers/Biomedical+Resea…
    mailto:darasappan@austin.utexas.edu
    https://wikis.utexas.edu/display/bioiteam/Resources
    https://www.tacc.utexas.edu/
    mailto:mwkeist@utexas.edu
    https://utexas.zoom.us/j/91424696609
Bioinformatics Team (BioITeam) at the University of Texas (35)     Page: RNA-Seq Approaches
    Page: Mapping with HISAT2
    Page: GO Enrichment
    Page: Assessing Mappings Results II
    Page: Assessing Mapping Results I
    Page: Logistics- Day 4
    Page: Logistics-Day 1
    Page: The Quickest Unix Refresher ever
    Page: Testing for Differential Expression
    Page: Gene Counting
    Page: Day 3 Take Away Points
    Page: Mapping with STAR
    Page: Day 2 Take Away Points
    Page: Plotting DESEQ2 Results
    Page: Evaluating your raw data
    Page: Stampede2 Directories
    Page: Pseudomapping with Kallisto
    Page: Visualization using Integrated Genome Viewer (IGV)
    Page: Running the new tuxedo suite
    Page: Day 1 Take Away Points
    Page: TACC Overview
    Page: Gene Set Enrichment Analysis (GSEA)
    Page: Single Cell RNA-Seq Script and Data
    Page: Logistics
    Page: Gene Category Enrichment using Mann-Whitney U tests
    Page: Clustering using WGCNA
    Page: Using the stampede2 cluster
    Page: Installing Tools on a Server
    Page: Logistics - Day 2
    Page: Introduction to RNA Seq Course
    Page: Pathway Analysis
    Page: Submitting Jobs to Stampede2
    Page: Dhivya's suggestions for QC cutoffs
    Page: Day 4 Take Away Points
    Page: Mapping with BWA