Page Information

Title:	The Basic Alignment Workflow
Author:	Anna M Battenhouse	May 12, 2014
Last Changed by:	Anna M Battenhouse	Jun 17, 2022
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/MLf5Aw
Export As:	Word · PDF

Core NGS Tools (2)     Home page: Core NGS Tools Home     Page: Day 4: Alignment and BAM file manipulation

Parent Page     Page: Day 4: Alignment and BAM file manipulation

There are no labels assigned to this page.

Time	Editor
Jun 17, 2022 15:54	Anna M Battenhouse	View Changes
Jun 16, 2022 10:08	Anna M Battenhouse	View Changes
Taking out --global for bowtie2
Jun 11, 2022 17:34	Anna M Battenhouse	View Changes
Jun 09, 2022 23:05	Anna M Battenhouse	View Changes
Jun 09, 2022 22:17	Anna M Battenhouse

External Links (12)
    www.ncbi.nlm.nih.gov/nuccore/NC_012582
    hgdownload.cse.ucsc.edu/goldenPath/sacCer3/bigZips/
    www.mirbase.org/ftp.shtml
    perldoc.perl.org/perlretut.html
    en.wikipedia.org/wiki/Burrows-Wheeler_transform
    blast.ncbi.nlm.nih.gov/Blast.cgi
    hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/
    en.wikipedia.org/wiki/Sequence_alignment_software
    https://samtools.github.io/hts-specs/SAMv1.pdf
    genomewiki.ucsc.edu/index.php/Hg19_Genome_size_statistics
    bio-bwa.sourceforge.net/bwa.shtml
    samtools.sourceforge.net/

Core NGS Tools (2)     Page: The Basic Alignment Workflow     Page: Linux fundamentals