Title: Core NGS Tools Home  
Author: Wiki Administrator (JL) May 05, 2014
Last Changed by: Anna M Battenhouse Jun 09, 2023
Tiny Link: (useful for email) https://wikis.utexas.edu/x/96f5Aw
Export As: Word · PDF  
Hierarchy
Children (8)
    Page: Day 1: Intro to NGS, Linux and TACC
    Page: Day 2: TACC batch system and FASTQ files
    Page: Day 3: Working with raw sequences
    Page: Day 4: Alignment and BAM file manipulation
    Page: Day 5: Post-Alignment Analysis
    Page: Resources
    Page: Catch up
    Page: Archive
Labels
There are no labels assigned to this page.
Recent Changes
Time Editor  
Jun 09, 2023 16:11 Anna M Battenhouse View Changes
Jun 04, 2023 20:46 Anna M Battenhouse View Changes
Jun 01, 2023 21:51 Anna M Battenhouse View Changes
Jun 01, 2023 12:29 Anna M Battenhouse View Changes
Jun 13, 2022 15:13 Anna M Battenhouse  
Outgoing Links
External Links (3)
    https://wikis.utexas.edu/display/CoreNGSTools/Running+batch…
    https://wikis.utexas.edu/display/CoreNGSTools
    https://utexas.zoom.us/j/92348799002
Core NGS Tools (15)     Page: Getting started at TACC
    Page: Introduction
    Home page: Core NGS Tools Home
    Page: Core NGS Resources
    Page: Decimal and Hexadecimal
    Page: File systems and transferring files
    Page: Data wrangling best practices
    Page: Analysis using BEDTools
    Page: The Basic Alignment Workflow
    Page: Catch up
    Page: Pre-processing raw sequences
    Page: Working with FASTQ files
    Page: More Alignment exercises
    Page: Linux fundamentals
    Page: Filtering with SAMTools