Page Information

Title:	Mapping tutorial
Author:	Scott Patrick Hunicke-Smith	Aug 09, 2012
Last Changed by:	Daniel Edward Deatherage	May 20, 2013
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/57keAg
Export As:	Word · PDF

Bioinformatics Team (BioITeam) at the University of Texas (15)     Page: Read Mapping with bowtie2 Tutorial GVA2023     Page: Read Mapping with bowtie2 Tutorial GVA2022     Page: Obsolete NGS course materials     Page: Read Mapping with bowtie2 Tutorial     Page: Differential gene expression analysis     Page: SSC Intro to NGS Bioinformatics Course     Page: Mapping with bowtie2 Tutorial     Page: Read Mapping with bowtie2 Tutorial GVA2021     Page: Variant calling tutorial     Page: SNV calling tutorial (GVA14)     Page: Integrative Genomics Viewer (IGV) tutorial     Page: Mapping tutorial (bowtie2, bwa) (GVA14)     Page: Read Mapping with bowtie2 Tutorial 2017     Page: Read Mapping with bowtie2 Tutorial GVA2020     Page: Read Mapping with bowtie2 Tutorial GVA2019

Parent Page     Page: SSC Intro to NGS Bioinformatics Course

• example

Time	Editor
May 20, 2013 06:05	Daniel Edward Deatherage	View Changes
Migrated to Confluence 5.3
May 20, 2013 06:05	Daniel Edward Deatherage	View Changes
Migrated to Confluence 4.0
May 20, 2013 06:05	Daniel Edward Deatherage	View Changes
May 20, 2013 05:56	Jeffrey E Barrick	View Changes
May 20, 2013 05:19	Jeffrey E Barrick

External Links (17)
    www.ncbi.nlm.nih.gov/sra
    bio-bwa.sourceforge.net/bwa.shtml
    bio-bwa.sourceforge.net/
    sourceforge.net/projects/bowtie-bio/files/bowtie/0.12.8/
    www.ncbi.nlm.nih.gov/pubmed/19838166
    sourceforge.net/projects/bowtie-bio/files/bowtie2/
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    en.wikipedia.org/wiki/List_of_sequence_alignment_software
    bowtie-bio.sourceforge.net/tutorial.shtml
    maq.sourceforge.net/
    sourceforge.net/projects/bio-bwa/files/
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    en.wikipedia.org/wiki/FASTQ_format
    en.wikipedia.org/wiki/GenBank
    samtools.sourceforge.net/SAM1.pdf
    genome.sph.umich.edu/wiki/SAM
    http://bowtie-bio.sourceforge.net/bowtie2/

Bioinformatics Team (BioITeam) at the University of Texas (4)     Page: Variant calling tutorial     Page: Integrative Genomics Viewer (IGV) tutorial     Page: SSC Intro to NGS Bioinformatics Course     Home page: Bioinformatics Team Home