Title: Differential expression with splice variant analysis aug2012  
Author: Dhivya Arasappan Aug 09, 2012
Last Changed by: Scott Patrick Hunicke-Smith Jan 27, 2014
Tiny Link: (useful for email) https://wikis.utexas.edu/x/dLseAg
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Incoming Links
Bioinformatics Team (BioITeam) at the University of Texas (1)
    Page: SSC Intro to NGS Bioinformatics Course
Hierarchy
Parent Page
    Page: SSC Intro to NGS Bioinformatics Course
Children (4)
    Page: Cuffmerge Assembly
    Page: Introduction to tophat cufflinks workflow
    Page: Split Read Alignment for Splice Finding
    Page: Tophat performance diagram
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Recent Changes
Time Editor  
Jan 27, 2014 05:30 Scott Patrick Hunicke-Smith View Changes
Migrated to Confluence 5.3
Jan 27, 2014 05:30 Scott Patrick Hunicke-Smith View Changes
May 23, 2013 06:28 Anna M Battenhouse View Changes
Migrated to Confluence 4.0
May 23, 2013 06:28 Anna M Battenhouse View Changes
May 22, 2013 10:23 Nathan Abell  
Outgoing Links
External Links (12)
    https://wikis.utexas.edu/display/bioiteam/Cuffmerge+Assembl…
    tophat.cbcb.umd.edu/manual.html
    cufflinks.cbcb.umd.edu/manual.html
    https://wikis.utexas.edu/display/bioiteam/Split+Read+Alignm…
    loving.corral.tacc.utexas.edu/bioiteam/tophat_cufflinks/bwa…
    cufflinks.cbcb.umd.edu/igenomes.html
    compbio.mit.edu/cummeRbund/manual.html
    www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32038
    loving.corral.tacc.utexas.edu/bioiteam/tophat_cufflinks/
    loving.corral.tacc.utexas.edu/bioiteam/tophat_cufflinks/C1_…
    loving.corral.tacc.utexas.edu/bioiteam/tophat_cufflinks/C2_…
    www.nature.com/nprot/journal/v7/n3/full/nprot.2012.016.html
Bioinformatics Team (BioITeam) at the University of Texas (3)     Page: NGS Course Resources
    Page: Introduction to tophat cufflinks workflow
    Page: Tophat performance diagram