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Bioinformatics Team Home
zArchive
Training
Bioinformatics Courses and Content
Genome Variant Analysis Course 2022
Page Information
Title:
Genome Variant Analysis Course 2022
Author:
Daniel Edward Deatherage
Jun 13, 2022
Last Changed by:
Daniel Edward Deatherage
Jun 24, 2022
Tiny Link:
(useful for email)
https://wikis.utexas.edu/x/SYvnFQ
Export As:
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Bioinformatics Team (BioITeam) at the University of Texas (29)
Page:
Molecular Index Error correction GVA2022
Page:
Accessing stampede2 (ssh on Windows10)
Page:
Stampede2 Breseq Tutorial GVA2022
Page:
Accessing stampede2 via ssh on MacOs GVA2022
Page:
MultiQC - fastQC summary tool -- GVA2022
Page:
Accessing stampede2 via ssh on Windows10 GVA 2022
Page:
Advanced breseq GVA2022
Page:
Annotating plasmids with pLannotate
Page:
IGV Tutorial -- GVA2022
Page:
Single Nucleotide Variant (SNV) calling Tutorial GVA2022
Page:
Genome Assembly (SPAdes) -- GVA2022
Page:
Advanced bowtie2 -- GVA2023
Page:
Bedtools tutorial -- GVA2022
Page:
Advanced bowtie2 -- GVA2022
Page:
Evaluating and processing raw sequencing data GVA2022
Page:
Annovar 2022
Page:
Genome Analysis Toolkit (GATK) . -- GVA2022
Page:
fastp - GVA2022
Page:
Structural Variant (SV) calling with SVdetect 2022
Page:
Novel DNA Identification -- GVA2022
Page:
Launching an iDev session GVA2022
Page:
SSCS vs Trimmed Read Variant calls GVA2022
Page:
Accessing stampede2 (ssh on MacOs)
Page:
Human Trios -- GVA2022
Page:
Exome Capture Metrics GVA2022
Page:
Breseq with multiple references GVA2022
Page:
Read Mapping with bowtie2 Tutorial GVA2022
Page:
Linux and stampede2 Setup -- GVA2022
Page:
GVA2022 - Class Review
Hierarchy
Parent Page
Page:
Bioinformatics Courses and Content
Children (29)
Page:
Accessing stampede2 via ssh on MacOs GVA2022
Page:
Accessing stampede2 via ssh on Windows10 GVA 2022
Page:
Advanced bowtie2 -- GVA2022
Page:
Advanced breseq GVA2022
Page:
Annotating plasmids with pLannotate
Page:
Annovar 2022
Page:
Bedtools tutorial -- GVA2022
Page:
Breseq with multiple references GVA2022
Page:
Evaluating and processing raw sequencing data GVA2022
Page:
Exome Capture Metrics GVA2022
Show all...
Page:
fastp - GVA2022
Page:
Genome Analysis Toolkit (GATK) . -- GVA2022
Page:
Genome Assembly (SPAdes) -- GVA2022
Page:
GVA2022 - Class Review
Page:
GVA2022 Day 1 Environment Checkup and Catchup
Page:
GVA Tutorial Template
Page:
Human Trios -- GVA2022
Page:
IGV Tutorial -- GVA2022
Page:
Launching an iDev session GVA2022
Page:
Linux and stampede2 Setup -- GVA2022
Page:
Molecular Index Error correction GVA2022
Page:
MultiQC - fastQC summary tool -- GVA2022
Page:
Novel DNA Identification -- GVA2022
Page:
Prokka Annotations -- GVA2022
Page:
Read Mapping with bowtie2 Tutorial GVA2022
Page:
Single Nucleotide Variant (SNV) calling Tutorial GVA2022
Page:
SSCS vs Trimmed Read Variant calls GVA2022
Page:
Stampede2 Breseq Tutorial GVA2022
Page:
Structural Variant (SV) calling with SVdetect 2022
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Recent Changes
Time
Editor
Jun 24, 2022 08:51
Daniel Edward Deatherage
View Changes
Jun 24, 2022 08:50
Daniel Edward Deatherage
View Changes
Jun 24, 2022 01:31
Daniel Edward Deatherage
View Changes
Jun 24, 2022 01:00
Daniel Edward Deatherage
View Changes
Jun 23, 2022 10:22
Daniel Edward Deatherage
View Page History
Outgoing Links
External Links (8)
https://wikis.utexas.edu/display/GSAF/About+Us#Scott
https://wikis.utexas.edu/display/bioiteam/Stampede2+Breseq+…
https://wikis.utexas.edu/display/bioiteam/Bedtools+tutorial…
https://www.tacc.utexas.edu/
https://wikis.utexas.edu/display/bioiteam/IGV+Tutorial+--+G…
https://wikis.utexas.edu/download/attachments/303732520/Alt…
https://barricklab.org/twiki/bin/view/Lab
barricklab.org/
Bioinformatics Team (BioITeam) at the University of Texas (25)
Page:
Genome Assembly (SPAdes) -- GVA2022
Page:
Launching an iDev session GVA2022
Page:
Evaluating and processing raw sequencing data GVA2022
Page:
Annotating plasmids with pLannotate
Page:
Advanced bowtie2 -- GVA2022
Page:
Single Nucleotide Variant (SNV) calling Tutorial GVA2022
Page:
Breseq with multiple references GVA2022
Page:
Genome Analysis Toolkit (GATK) . -- GVA2022
Page:
Advanced breseq GVA2022
Page:
Genome Variant Analysis Course 2022
Page:
fastp - GVA2022
Page:
Human Trios -- GVA2022
Page:
Exome Capture Metrics GVA2022
Page:
Linux and stampede2 Setup -- GVA2022
Page:
Accessing stampede2 via ssh on Windows10 GVA 2022
Page:
MultiQC - fastQC summary tool -- GVA2022
Page:
SSCS vs Trimmed Read Variant calls GVA2022
Page:
Accessing stampede2 via ssh on MacOs GVA2022
Page:
Annovar 2022
Page:
Structural Variant (SV) calling with SVdetect 2022
Page:
GVA2022 - Class Review
Page:
GVA2022 Day 1 Environment Checkup and Catchup
Page:
Molecular Index Error correction GVA2022
Page:
Read Mapping with bowtie2 Tutorial GVA2022
Page:
Novel DNA Identification -- GVA2022
Overview
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