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Core NGS Tools Home
Resources
Linux fundamentals
Page Information
Title:
Linux fundamentals
Author:
Anna M Battenhouse
May 13, 2014
Last Changed by:
Anna M Battenhouse
Aug 22, 2022
Tiny Link:
(useful for email)
https://wikis.utexas.edu/x/k7v5Aw
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Core NGS Tools (11)
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Core NGS Resources
Page:
Getting started at TACC
Page:
Old stuff
Page:
Running batch jobs at TACC
Page:
Pre-processing raw sequences
Page:
Working with FASTQ files
Page:
Analysis using BEDTools
Page:
Copy of good Alignment workflow
Home page:
Core NGS Tools Home
Page:
More Alignment exercises
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The Basic Alignment Workflow
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Recent Changes
Time
Editor
Aug 22, 2022 11:41
Anna M Battenhouse
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Jun 27, 2022 11:22
Anna M Battenhouse
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Jun 17, 2022 08:23
Anna M Battenhouse
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Jun 12, 2022 17:08
Daryl Rose Barth
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Jun 11, 2022 22:28
Anna M Battenhouse
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Outgoing Links
External Links (16)
www.chiark.greenend.org.uk/~sgtatham/putty/download.html
https://notepad-plus-plus.org/downloads/
www.atmos.albany.edu/daes/atmclasses/atm350/vi_cheat_sheet.…
https://docs.microsoft.com/en-us/windows/wsl/install-win10
perldoc.perl.org/perlretut.html
www.hypexr.org/linux_scp_help.php
https://www.regular-expressions.info/
https://ryanstutorials.net/linuxtutorial/
https://regexone.com/
https://the.earth.li/~sgtatham/putty/latest/w64/putty-64bit…
www.cygwin.com/
www.activestate.com/komodo-edit/downloads
www.grymoire.com/Unix/Awk.html
https://en.wikipedia.org/wiki/POSIX
https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf
https://winscp.net/eng/index.php
Bioinformatics Team (BioITeam) at the University of Texas (1)
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SSC Intro to NGS Bioinformatics Course
Core NGS Tools (1)
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Linux fundamentals
wikis.utexas.edu/display/CbbShortBashScript (1)
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