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Title:	Linux fundamentals
Author:	Anna M Battenhouse	May 13, 2014
Last Changed by:	Anna M Battenhouse	Jun 09, 2023
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/k7v5Aw
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Core NGS Tools (12)     Page: Core NGS Resources     Page: Getting started at TACC     Page: Old stuff     Page: Running batch jobs at TACC     Page: Pre-processing raw sequences     Page: Working with FASTQ files     Page: Analysis using BEDTools     Page: Copy of good Alignment workflow     Page: File systems and transferring files     Home page: Core NGS Tools Home     Page: More Alignment exercises     Page: The Basic Alignment Workflow

Parent Page     Page: Resources

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Time	Editor
Jun 09, 2023 08:51	Anna M Battenhouse	View Changes
Jun 06, 2023 21:22	Anna M Battenhouse	View Changes
Jun 06, 2023 19:16	Anna M Battenhouse	View Changes
Jun 06, 2023 19:10	Anna M Battenhouse	View Changes
Jun 06, 2023 19:09	Anna M Battenhouse

External Links (22)
    www.chiark.greenend.org.uk/~sgtatham/putty/download.html
    https://notepad-plus-plus.org/downloads/
    www.atmos.albany.edu/daes/atmclasses/atm350/vi_cheat_sheet.…
    https://docs.microsoft.com/en-us/windows/wsl/install-win10
    mywiki.wooledge.org/BashFAQ
    www.hypexr.org/linux_scp_help.php
    https://wikis.utexas.edu/display/CbrsIntermUnix
    perldoc.perl.org/perlretut.html
    https://www.regular-expressions.info/
    https://unix.stackexchange.com/questions/209123/understandi…
    https://www.asciitable.com/
    mywiki.wooledge.org/BashGuide
    regexone.com
    https://wikis.utexas.edu/display/CbrsIntroUnix
    ryanstutorials.net/bash-scripting-tutorial/
    https://www.gnu.org/software/bash/manual/html_node/Bash-Con…
    www.activestate.com/komodo-edit/downloads
    ryanstutorials.net/regular-expressions-tutorial/
    www.grymoire.com/Unix/Awk.html
    mywiki.wooledge.org/BashPitfalls
    https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf
    https://winscp.net/eng/index.php

Bioinformatics Team (BioITeam) at the University of Texas (1)     Page: SSC Intro to NGS Bioinformatics Course

Core NGS Tools (2)     Page: Decimal and Hexadecimal     Page: Linux fundamentals