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Title:	Linux fundamentals
Author:	Anna M Battenhouse	May 13, 2014
Last Changed by:	Anna M Battenhouse	Aug 22, 2022
Tiny Link: (useful for email)	https://wikis.utexas.edu/x/k7v5Aw
Export As:	Word · PDF

Core NGS Tools (11)     Page: Core NGS Resources     Page: Getting started at TACC     Page: Old stuff     Page: Running batch jobs at TACC     Page: Pre-processing raw sequences     Page: Working with FASTQ files     Page: Analysis using BEDTools     Page: Copy of good Alignment workflow     Home page: Core NGS Tools Home     Page: More Alignment exercises     Page: The Basic Alignment Workflow

Parent Page     Page: Resources

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Time	Editor
Aug 22, 2022 11:41	Anna M Battenhouse	View Changes
Jun 27, 2022 11:22	Anna M Battenhouse	View Changes
Jun 17, 2022 08:23	Anna M Battenhouse	View Changes
Jun 12, 2022 17:08	Daryl Rose Barth	View Changes
Jun 11, 2022 22:28	Anna M Battenhouse

External Links (16)
    www.chiark.greenend.org.uk/~sgtatham/putty/download.html
    https://notepad-plus-plus.org/downloads/
    www.atmos.albany.edu/daes/atmclasses/atm350/vi_cheat_sheet.…
    https://docs.microsoft.com/en-us/windows/wsl/install-win10
    perldoc.perl.org/perlretut.html
    www.hypexr.org/linux_scp_help.php
    https://www.regular-expressions.info/
    https://ryanstutorials.net/linuxtutorial/
    https://regexone.com/
    https://the.earth.li/~sgtatham/putty/latest/w64/putty-64bit…
    www.cygwin.com/
    www.activestate.com/komodo-edit/downloads
    www.grymoire.com/Unix/Awk.html
    https://en.wikipedia.org/wiki/POSIX
    https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf
    https://winscp.net/eng/index.php

Bioinformatics Team (BioITeam) at the University of Texas (1)     Page: SSC Intro to NGS Bioinformatics Course

Core NGS Tools (1)     Page: Linux fundamentals

wikis.utexas.edu/display/CbbShortBashScript (1)     Page: Tips and tricks