Title: The Basic Alignment Workflow  
Author: Anna M Battenhouse May 12, 2014
Last Changed by: Anna M Battenhouse Jun 09, 2023
Tiny Link: (useful for email) https://wikis.utexas.edu/x/MLf5Aw
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Incoming Links
Core NGS Tools (3)
    Page: Filtering with SAMTools
    Home page: Core NGS Tools Home
    Page: Day 4: Alignment and BAM file manipulation
Hierarchy
Parent Page
    Page: Day 4: Alignment and BAM file manipulation
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Recent Changes
Time Editor  
Jun 09, 2023 13:16 Anna M Battenhouse View Changes
Jun 09, 2023 12:34 Anna M Battenhouse View Changes
Jun 07, 2023 18:48 Anna M Battenhouse View Changes
Jun 07, 2023 18:24 Anna M Battenhouse View Changes
Jun 06, 2023 21:51 Anna M Battenhouse  
Outgoing Links
External Links (12)
    www.ncbi.nlm.nih.gov/nuccore/NC_012582
    hgdownload.cse.ucsc.edu/goldenPath/sacCer3/bigZips/
    www.mirbase.org/ftp.shtml
    perldoc.perl.org/perlretut.html
    en.wikipedia.org/wiki/Burrows-Wheeler_transform
    blast.ncbi.nlm.nih.gov/Blast.cgi
    hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/
    en.wikipedia.org/wiki/Sequence_alignment_software
    https://samtools.github.io/hts-specs/SAMv1.pdf
    genomewiki.ucsc.edu/index.php/Hg19_Genome_size_statistics
    bio-bwa.sourceforge.net/bwa.shtml
    samtools.sourceforge.net/
Core NGS Tools (2)     Page: The Basic Alignment Workflow
    Page: Linux fundamentals