Overall Course Learning Objectives
- Be capable of navigating a Linux operating system and TACC's Lonestar system in particular
- Understand the biological questions, technologies, and workflows related to genome variant analysis, including:
- Types of variants detectable by NGS
- Terms: eQTL / GWAS / causative mutation analysis / population genetics
- phylogenetics: evolution (e.g. quasi-species evolution), ecology (e.g. populations, pooled samples, bacterial communities)
- Genotype / phenotype associations - either at a gross scale (e.g. mapping) or fine scale (e.g. causative mutations)
- Technologies:
- WGA
- Exome
- ddRAD
- sequencing technologies
- Related topics which are outside the scope of this course include: allele specific expression, methylation analysis, ChIP-seq, RIP-seq
Learning Objectives: Day 1, Part 1: Linux/TACC Introduction
- Learn and practice essential Linux concepts and commands, including where to get more help & information
- Learn and practice working with TACC systems (Lonestar in particular)
Other Resources:
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