Old Etherpad link: https://etherpad.mozilla.org/g2NxIEAFWL
Misc Day 1: Linux/TACC Introduction
- Linux fundamentals
- Getting started at TACC
- Editing files (old)
- Stampede profile (old)
- Piping and redirection (old)
Misc Day 2: Raw Sequencing data manipulation
- Pre-processing FASTQ sequences (old)
- Example of NGS analyses
- The FASTA sequencing data format
- Batch manipulation of FASTQ files
Misc Day 4: Odds & Ends
- Obtaining public datasets from NCBI (needs update)
- Visualize mapped data at UCSC genome browser (needs update)
- Shell scripting (needs update)
