course slides

Logging into TACC

Link to exercise materials:

The exercises are written with expectation that files can be copied from here:

/work/02260/grovesd/lonestar/intro_to_rad_2017/

Exercises:

Planning:

in silico digestion

Data Processing:

demultiplex ddRAD

demultiplex 2bRAD

mapping ddRAD reads

denovo locus generation 2bRAD

genotyping ddRAD mpileup

Analysis:

vcftools

PCA

DAPC

Admixture

Other key links:

Full 2bRAD denovo pipeline

Full 2bRAD Reference Genome pipeline

References: