cds cd my_rnaseq_course cd day_1_partA/tacc_exercise |
First you need all the files. One is missing. Download it from here -> genes.1 and transfer it to your lonestar5 account (under day_1_partA/tacc_exercise)
Use the scp command from your computer (or winscp if its a windows machine) |
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Make a commands file with the unix commands to print the first 10 lines of each file into an output file.
Open an editor to create a file called commands Use head command to print the first 10 lines. |
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Use launcher_creator.py to create a launcher to submit this job (command file).
launcher_creator.py -h to see the options. |
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Submit the job.
Use our summer school reservation when submitting jobs to get higher priority: sbatch --reservation=intro_NGS |
sbatch |
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Check the queue.
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Check the output files and log files.
Look at <jobname>.o* file for output information Look at <jobname>.e* file for log/error information |
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