course slides
course files
Setup:
Log into stampede2
Installations
Get course files
Exercises:
Planning:
in silico digestion
Data Processing:
ddRAD data processing
process 2bRAD
denovo 2bRAD
Analysis:
PCA example
DAPC example
Admixture example
Pungitius exercise
Full M. cavernosa pipeline
Other key links:
2bRAD_denovo
2bRAD_GATK