The following is a categorized list of software available through the UT GSAF and/or TACC's life sciences group. Each page lists a summary of the software, the hardware it is currently installed on, links to user documentation, and helpful tips.
Many of these are available via the TACC module
system (use module keyword
or module spider
to search).
The current listing of modules and versions available on Lonestar is also posted here.
In addition, the BioITeam maintains executables in /corral-repl/utexas/BioITeam/bin
; we advise adding this directory to your path.
Contents
Galaxy Workflows
General purpose tools
Microarray data analysis tools
NGS Data Quality Control Tools
Mappers/Aligners
Gene prediction tools
SNP discovery and Annotation
RNA-Seq Analysis
Splice Junction discovery
Genome Alignment and Visualization
De novo assembly
Transcriptome de novo assembly
ABI pipelines
454 Analysis tools
Current Roche/454 software versions on Fourierseq are all 2.5.3. Tarballs of various 454 software versions are available at /home/daras/454sw*
Useful scripts
Software users group meetings